Our Research Publications



CheXtriev: Anatomy-Centered Representation for Case-Based Retrieval of Chest Radiographs

Naren Akash R J*, Arihanth Srikar* and Jayanthi Sivaswamy (* = joint first authors)

Medical Image Computing and Computer Assisted Interventions (MICCAI) 2024 (Marrakech, Morocco)



Nerve Block Target Localization and Needle Guidance for Autonomous Robotic Ultrasound Guided Regional Anesthesia

Abhishek Tyagi, Abhay Tyagi, Manpreet Kaur, Richa Aggarwal, Kapil Soni, Jayanthi Sivaswamy and Anjan Trikha

IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) 2024 (Abu Dhabi, UAE)



“Visualization matters” – stereoscopic visualization of 3D graphic neuroanatomic models through AnaVu enhances basic recall and radiologic anatomy learning when compared with monoscopy

Doris George Yohannan, Aswathy Oommen, Amruth S Kumar, S Devanand, Minha Resivi Ut, Navya Sajan, Neha Thomas, Nasreen Anzer, Nithin K Raju, Bejoy Thomas, Jayadevan E Rajan, Umesan K Govindapillai, Pawan Harish, Tirur Raman Kapilamoorthy, Chandrasekharan Kesavadas, Jayanthi Sivaswamy

BMC Medical Education 2024



Leveraging Spatial Guidance for Accurate Multi-Organ Segmentation in Abdominal CT

Samruddhi Shastri, Naren Akash R J and Jayanthi Sivaswamy

Under Review



Locate-then-Delineate: A Free Text Guided Approach for Pneumothorax Segmentation in Chest Radiographs

Samruddhi Shastri*, Naren Akash R J*, Lokesh Gautham and Jayanthi Sivaswamy (* = joint first authors)

In IEEE International Symposium on Biomedical Imaging (ISBI), May 2024 (Athens, Greece)



Global Space Modelling of Biological Processes With Cross-Sectional Data

Alphin Thottupattu, Jayanthi Sivaswamy and Venkateswaran P Krishnan

In Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP), December 2023



AnaVu: A Scalable Anatomical 3D Visualization System for Classroom Teaching

Pawan Harish, Jayanthi Sivaswamy, Priyanka Srivastava, Doris George Yohannan, Sirisha Bandi, Sarada Devi Sattiraju and P J Narayanan

In IEEE International Conference on Teaching, Assessment and Learning for Engineering (TALE), November 2023 (Auckland, New Zealand)



Evidence-Driven Differential Diagnosis of Malignant Melanoma

Naren Akash R J, Anirudh Kaushik and Jayanthi Sivaswamy

In International Conference on Medical Image Computing and Computer Assited Interventions (MICCAI) ISIC Skin Image Analysis Workshop, October 2023 (Vancouver, Canada)



Anatomy Teacher’s Perspectives on Using AnaVu: A Novel Low-resource Stereoscopic Projection System for Neuroanatomy Education

Doris George Yohannan, Aswathy Maria Oommen, Nithin Kadakampallill Raju, Bejoy Thomas, Jayadevan Enakshy Rajan, Umesan Kannavilakom Govindapillai, Pawan Harish, Tirur Raman Kapilamoorthy, Chandrasekharan Kesavadas and Jayanthi Sivaswamy

In National Journal of Clinical Anatomy, October 2023



A Diffeomorphic Aging Model for Adult Human Brain from Cross-Sectional Data

Alphin J Thottupattu, Jayanthi Sivaswamy and Venkateswaran P Krishnan

In Nature Scientific Reports 12, Article Number: 12638, July 2022



A Method for Image Registration via Broken Geodesics

Alphin J Thottupattu, Jayanthi Sivaswamy and Venkateswaran P Krishnan

In International Workshop on Biomedical Image Registration (WBIR), July 2022



Fast Detection of Sulcal Regions for Classification of Alzheimer’s disease and Mild Cognitive Impairment

Abhinav Dhere, Vikas Vazhayil and Jayanthi Sivaswamy

In IEEE International Conference on Signal Processing and Communications (SPCOM), July 2022



COVID Detection from Chest X-Ray Images using Multi-Scale Attention

Abhinav Dhere and Jayanthi Sivaswamy

In IEEE Journal of Biomedical and Health Informatics (JBHI), April 2022



A Method to Remove Size Bias in Sub-Cortical Structure Segmentation

Mythri V*, Alphin J Thottupattu*, Naren Akash R J and Jayanthi Sivaswamy

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2022



Incremental Learning for a Flexible CAD System Design

Prathyusha Akundi and Jayanthi Sivaswamy

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2022



Manifold Learning to Address Catastrophic Forgetting

Prathyusha Akundi and Jayanthi Sivaswamy

In Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP), December 2021



Glaucoma Assessment from Fundus Images with Fundus to OCT Feature Space Mapping

Divya Jyothi Gaddipati and Jayanthi Sivaswamy

In ACM Transactions on Computing for Healthcare, October 2021



Lung Nodule Malignancy Classification with Weakly-Supervised Explanation Generation

Aniket Joshi, Jayanthi Sivaswamy and Gopal Datt Joshi

In SPIE Journal of Medical Imaging, July 2021



Explainable Disease Classification via Weakly-Supervised Segmentation

Aniket Joshi, Gaurav Mishra and Jayanthi Sivaswamy

In International Conference on Medical Image Computing and Computer Assited Interventions (MICCAI) Workshop on Interpretability of Machine Intelligence in Medical Image Computing, October 2020



A Fast Method For Shape Template Generation

Alphin J Thottupattu and Jayanthi Sivaswamy

In IEEE International Conference on Image Processing (ICIP), October 2020



Image Segmentation Using Hybrid Representations

Alakh Desai, Ruchi Chauhan and Jayanthi Sivaswamy

In International Symposium on Biomedical Imaging (ISBI), April 2020



Glaucoma Assessment from OCT images using Capsule Network

Divya Jyothi Gaddipati, Alakh Desai, Jayanthi Sivaswamy and Koenraad A Vermeer

In Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), July 2019



FPD-M-net: Fingerprint Image Denoising and Inpainting Using M-Net Based Convolutional Neural Networks

Sukesh Adiga V and Jayanthi Sivaswamy

In Inpainting and Denoising Challenges, October 2019
3rd Rank in ECCV 2018 Satellite Event by Chalearn LAP In-painting Competition Track-3



Synthesis of Optical Nerve Head Region of Fundus Image

Anurag Deshmukh and Jayanthi Sivaswamy

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2019



Matching the Characteristics of Fundus and Smartphone Camera Images

Sukesh Adiga V and Jayanthi Sivaswamy

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2019



Construction of Indian Human Brain Atlas

Jayanthi Sivaswamy, Alphin J Thottupattu, Raghav Mehta, R Sheelakumari and Chandrasekharan Kesavadas

In Neurology India, January 2019



Segmentation of Retinal Cysts From Optical Coherence Tomography Volumes Via Selective Enhancement

Karthik Gopinath and Jayanthi Sivaswamy

In IEEE Journal of Biomedical and Health Informatics (JBHI), January 2019


Shared Encoder based Denoising of Optical Coherence Tomography Images

Sukesh Adiga V and Jayanthi Sivaswamy

In Indian Conference on Computer Graphics, Vision and Image Processing (ICVGIP), December 2018



Scan, Dwell, Decide: Strategies for Detecting Abnormalities in Diabetic Retinopathy

Samrudhdhi B Rangrej, Jayanthi Sivaswamy and Priyanka Srivastava

In PLoS One, November 2018



A Supervised Joint Multi-layer Segmentation Framework for Retinal Optical Coherence Tomography Images using Conditional Random Field

Arunava Chakravarty and Jayanthi Sivaswamy

In Computer Methods and Programs in Biomedicine, October 2018



To Learn Or Not To Learn Features For Deformable Registration?

Aabhas Majumdar, Raghav Mehta and Jayanthi Sivaswamy

In International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI) Workshop on Deep Learning Fails, October 2018



Solution to Overcome the Sparsity Issue of Annotated Data in Medical Domain

Pujitha Appan K and Jayanthi Sivaswamy

In CAAI Transactions on Intelligence Technology, August 2018



RACE-Net: A Recurrent Neural Network for Biomedical Image Segmentation

Arunava Chakravarty and Jayanthi Sivaswamy

In IEEE Journal of Biomedical and Health Informatics (JBHI), July 2018



Topography and Correlation of Radial Peripapillary Capillary Density Network with Retinal Nerve Fibre Layer Thickness

Tarannum Mansoori, Jayanthi Sivaswamy, Jahnavi Sai Gamalapati and Nagalla Balakrishna

In International Ophthalmology, June 2018



Construction of a Retinal Atlas for Macular OCT Volumes

Arunava Chakravarty, Divya Jyothi Gaddipati and Jayanthi Sivaswamy

In International Conference on Image Analysis and Recognition (ICIAR), June 2018



Retinal Image Synthesis for CAD Development

Pujitha Appan K and Jayanthi Sivaswamy

In International Conference on Image Analysis and Recognition (ICIAR), June 2018



Multimodal Registration of Retinal Images

Jahnavi Sai Gamalapati and Jayanthi Sivaswamy

In National Conference on Computer Vision, Pattern Recognition, Image Processing and Graphics (NCVPRIPG), December 2017



Crowdsourced Annotations as an Additional Form of Data Augmentation for CAD Development

Pujitha Appan K and Jayanthi Sivaswamy

In IAPR Asian Conference on Pattern Recognition (ACPR), November 2017



A Deep Learning Framework for Segmentation of Retinal Layers from OCT Images

Karthik Gopinath, Samrudhdhi B Rangrej and Jayanthi Sivaswamy

In IAPR Asian Conference on Pattern Recognition (ACPR), November 2017



Joint Optic Disc and Cup Boundary Extraction from Monocular Fundus Images,

Arunava Chakravarty and Jayanthi Sivaswamy

In Computer Methods and Programs in Biomedicine, August 2017



End-to-end Learning of a Conditional Random Field for Intra-retinal Layer Segmentation in Optical Coherence Tomography

Arunava Chakravarty and Jayanthi Sivaswamy

In Annual Conference on Medical Image Understanding and Analysis (MIUA), July 2017



BrainSegNet: A Convolutional Neural Network Architecture for Automated Segmentation of Human Brain Structures

Raghav Mehta, Aabhas Majumdar and Jayanthi Sivaswamy

In Journal of Medical Imaging, April 2017



Assistive Lesion-Emphasis System: An Assistive System for Fundus Image Readers

Samrudhdhi B Rangrej and Jayanthi Sivaswamy

In Journal of Medical Imaging, April 2017



Radial Peripapillary Capillary Density Measurement Using Optical Coherence Tomography Angiography in Early Glaucoma

Tarannum Mansoori, Jayanthi Sivaswamy, Jahnavi Sai Gamalapati and Nagalla Balakrishna

In Journal of Glaucoma, May 2017



Detection of Neovascularisation from Retinal Images using Semi-Supervised Learning

Pujitha Appan K, Jahnavi Sai Gamalapati and Jayanthi Sivaswamy

In International Symposium on Biomedical Imaging (ISBI), April 2017



M-net: A Convolutional Neural Network for Deep Brain Segmentation

Raghav Mehta and Jayanthi Sivaswamy

In International Symposium on Biomedical Imaging (ISBI), April 2017



Vessel Keypoint Detector for Junction Classification

Chetan L Srinidhi, Priyadarshi Rath and Jayanthi Sivaswamy

In International Symposium on Biomedical Imaging (ISBI), April 2017



Measurement of Radial Peripapillary Capillary Density in the Normal Human Retina Using Optical Coherence Tomography Angiography

Tarannum Mansoori, Jayanthi Sivaswamy, Jahnavi Sai Gamalapati, Satish Gooty Agraharam and Nagalla Balakrishna

In Journal of Glaucoma, March 2017



Numerical Inversion of Circular arc Radon Transform

Tabish A Syed, Venkateswaran P Krishnan and Jayanthi Sivaswamy

In IEEE Transactions on Computational Imaging, December 2016



Cardiac Motion Analysis by Temporal Flow Graphs

V S R Veeravasarapu, Jayanthi Sivaswamy, Vishanji Karani

In Computing Research Repository (CoRR), April 2016



Automated Detection of Glaucoma From Topographic Features of the Optic Nerve Head in Color Fundus Photographs

ALipi Chakrabarty, Gopal Datt Joshi, Arunava Chakravarty, Ganesh V Raman, S R Krishnadas, Jayanthi Sivaswamy

In Journal of Glaucoma, July 2016



A Biologically Inspired Saliency Model for Color Fundus Images

Samrudhdhi B Rangrej and Jayanthi Sivaswamy

In Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP), December 2016



Glaucoma Classification with a Fusion of Segmentation and Image-based Features

Arunava Chakravarty and Jayanthi Sivaswamy

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2016



A Hybrid Approach to Tissue-based Intensity Standardization of Brain MRI Images

Raghav Mehta and Jayanthi Sivaswamy

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2016



Automatic Glaucoma Assessment from Angio-OCT Images

Karthik Gopinath, Jayanthi Sivaswamy and Tarannum Mansoori

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2016



Optic disk and macula detection from retinal images using Generalized Motion Pattern

Gaurav Mittal and Jayanthi Sivaswamy

In National Conference on Computer Vision, Pattern Recognition, Image Processing and Graphics (NCVPRIPG), December 2015



Latent Factor Model based Classification for Detecting Abnormalities in Retinal Images

Tabish A Syed and Jayanthi Sivaswamy

In IAPR Asian Conference on Pattern Recognition (ACPR), November 2015



Regenerative Random Forest with Automatic Feature Selection to Detect Mitosis in Histopathological Breast Cancer Images

Angshuman Paul, Anisha Dey, Dipti Prasad Mukherjee, Jayanthi Sivaswamy and Vijaya Tourani

In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), October 2015



PET Image Reconstruction and Denoising on Hexagonal Lattices

Tabish A Syed and Jayanthi Sivaswamy

In IEEE International Conference on Image Processing (ICIP), September 2015



An Assistive Annotation System for Retinal Images

Ujjwal, Arunava Chakravarty and Jayanthi Sivaswamy

In International Symposium on Biomedical Imaging, April 2015



A Comprehensive Retinal Image Dataset for the Assessment of Glaucoma from the Optic Nerve Head Analysis

Jayanthi Sivaswamy, S. R. Krishnadas, Arunava Chakravarty, Gopal Dutt Joshi, Ujjwal and Tabish A Syed

In JSM Biomedical Imaging Data Papers, March 2015



Drishti-GS: Retinal Image Dataset for Optic Nerve Head(ONH) Segmentation

Jayanthi Sivaswamy, S. R. Krishnadas, Gopal Datt Joshi, Madhulika Jain, Ujjwa, Tabish A Syed

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2014



Coupled Sparse Dictionary for Depth-based Cup Segmentation from Single Color Fundus Image

Arunava Chakravarty and Jayanthi Sivaswamy

In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), September 2014



Bilateral Symmetry based Framework for Joint Detection of Optic Disk and Macula in Color Fundus Images

Ayush Tewari, Dhwanit Gupta and Jayanthi Sivaswamy

In IEEE International Conference on Signal Processing and Communications (SPCOM), July 2014



Time-frequency Analysis based Motion Detection in Perfusion Weighted MRI

Sushma M, Anubha Gupta and Jayanthi Sivaswamy

In National Conference on Computer Vision, Pattern Recognition, Image Processing and Graphics (NCVPRIPG), December 2013



Visual Saliency based Bright Lesion Detection and Discrimination in Retinal Images

Ujjwal, K Sai Deepak, Arunava Chakravarty and Jayanthi Sivaswamy

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2013



A Bag of Words Approach for Discriminating between Retinal Images Containing Exudates or Drusen

Mark J. J. P. van Grinsven, Arunava Chakravarty, Jayanthi Sivaswamy, Thomas Theelen, Bram Van Ginneken and Clara I. Sánchez

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2013



A Novel Approach for Quantification of Retinal Vessel Tortuosity using Quadratic Polynomial Decomposition

Arunava Chakravarty and Jayanthi Sivaswamy

In Indian Conference on Medical Informatics and Telemedicine (ICMIT), March 2013



Auto-Windowing of Ischemic Stroke Lesions in Diffusion Weighted Imaging of the Brain

Shashank Mujumdar, Jayanthi Sivaswamy, L. T. Kishore and Ravi Varma

In Indian Conference on Medical Informatics and Telemedicine (ICMIT), March 2013



Depth Discontinuity-Based Cup Segmentation From Multiview Color Retinal Images

Gopal Datt Joshi, Jayanthi Sivaswamy and S. R. Krishnadas

In IEEE Transactions on Biomedical Engineering, Volume: 59, Issue: 6, June 2012



Detection and Discrimination of Disease-related Abnormalities based on Learning Normal Cases

K Sai Deepak, N. V. Kartheek Medathati and Jayanthi Sivaswamy

In Pattern Recognition, Volume: 45, Issue: 10, October 2012



Automatic Assessment of Macular Edema from Color Retinal Images

K Sai Deepak and Jayanthi Sivaswamy

In IEEE Transactions on Medical Imaging, Volume: 31, Issue: 3, March 2012



An Efficient, Bolus-Stage Based Method for Motion Correction in Perfusion Weighted MRI

Rohit Gautam, Jayanthi Sivaswamy and Ravi Varma

In International Conference on Pattern Recognition (ICPR), November 2012



A Novel Framework for Segmentation of Stroke Lesions in Diffusion Weighted MRI using Multiple b-value Data

Shashank Mujumdar, Jayanthi Sivaswamy, L. T. Kishore and Ravi Varma

In International Conference on Pattern Recognition (ICPR), November 2012



Assessment of Computational Visual Attention Models on Medical Images

Varun Jampani, Ujjwal, Jayanthi Sivaswamy and Vivek Vaidya

In Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP), December 2012



Motion Pattern-Based Image Features for Glaucoma Detection from Retinal Images

K Sai Deepak, Madhulika Jain, Gopal Datt Joshi and Jayanthi Sivaswamy

In Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP), December 2012



A Method for Motion Detection and Categorization in Perfusion Weighted MRI

Rohit Gautam, Jayanthi Sivaswamy and Ravi Varma

In Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP), December 2012



A Supervised Background Learning Method for Stroma Identification from H&E images

Anisha Dey, Jayanthi Sivaswamy and Vijaya Tourani

In Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP) MedImage Workshop, December 2012



Estimating the Functional Networks from Sudden Respiratory Changes - a fMRI Group ICA Method Study

K Vemuri and Jayanthi Sivaswamy

In Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP) MedImage Workshop, December 2012



Detection of Peri-Papillary Atrophy and RNFL Defect from Retinal Images

Gopal Datt Joshi, Jayanthi Sivaswamy, R. Prashanth and S. R. Krishnadas

In International Conference on Image Analysis and Recognition (ICIAR), June 2012



Image Mosaicing of Low Quality Neonatal Retinal Images

Akhilesh Bontala, Jayanthi Sivaswamy and Rajeev R Pappuru

In IEEE International Symposium on Biomedical Imaging (ISBI), April 2012